Atoms. Structure and models of the atom
The online atom simulations on this page allow us to visualize what the structure of an atom is like, what an isotope is and some of the models of the atom that have had the most historical importance.
This Thematic Unit is part of our Chemistry collection

STEM OnLine mini dictionary
Atom
Basic unit of ordinary matter composed of a dense nucleus surrounded by a cloud of electrons.
Atomic Mass Unit
One-twelfth of the mass of a carbon-12 (¹²C) atom, used to express masses of atoms and molecules.
Atomic Nucleus
Central region of the atom, positively charged, containing almost all the mass of the system as protons and neutrons.
Atomic Number
Total number of protons in each atom of a given chemical element, represented by the letter Z.
Electron
Subatomic particle with a negative electrical charge of -1.602 × 10⁻¹⁹ C orbiting the atomic nucleus.
Electron Cloud
Outer region of the atom surrounding the nucleus where electrons are distributed in different energy levels.
Mass Number
Sum of the number of protons and neutrons present in the nucleus of an atom, represented by the letter A.
Neutron
Subatomic particle with no net electrical charge and a mass slightly greater than that of a proton, located in the nucleus.
Proton
Subatomic particle with a positive electrical charge of 1.602 × 10⁻¹⁹ C located in the atom’s nucleus.
What is an atom
An atom is the fundamental unit of matter. It is composed of a central nucleus, which contains protons and neutrons, and electrons that orbit around the nucleus. Protons have a positive charge, electrons have a negative charge, and neutrons have no electric charge.
Atomic number
The number of protons in an atom determines its atomic number, which in turn defines the chemical element to which it belongs. For example, hydrogen has one proton, while oxygen has eight. Electrons are distributed in different energy levels called electron shells.
Molecules
Atoms can combine with each other to form molecules through chemical bonds. This occurs when the electrons of the atoms interact, sharing or transferring electrons with each other. Different combinations of elements and their bonds give rise to a wide variety of chemical substances and compounds.
Structure and Models of the Atom
Our understanding of atomic structure has evolved over time, from early philosophical ideas to modern scientific models based on quantum mechanics.
Early ideas and Dalton’s model
In Ancient Greece, philosophers like Democritus proposed that matter was made up of indivisible particles called atoms. In the 19th century, John Dalton developed the first scientific model, describing the atom as a solid, indivisible sphere.
Thomson’s model
In 1897, J. J. Thomson discovered the electron and proposed the plum pudding model, in which electrons were embedded in a positively charged mass.
Rutherford’s nuclear model
In 1911, after his gold foil experiment, Ernest Rutherford concluded that the atom has a small, dense nucleus with a positive charge, surrounded by moving electrons.
Bohr’s model
In 1913, Niels Bohr proposed that electrons move in circular orbits with defined energy levels. This model explained the hydrogen atom well but failed for more complex atoms.
Modern quantum mechanical model
The development of quantum mechanics led to the current model of the atom. In this model, electrons do not follow fixed orbits but are located in atomic orbitals, regions where there is a higher probability of finding them. These orbitals are organized into energy levels and sublevels, determining each element’s chemical and physical properties.
Electron configuration
Electron configuration describes how an atom’s electrons are distributed among its orbitals. The filling order follows the Aufbau principle, Hund’s rule, and the Pauli exclusion principle, ensuring electrons occupy the lowest-energy levels first. Electron configuration is key to understanding an element’s chemical reactivity and its position in the periodic table.
The importance of understanding atoms
The understanding of the atom has led to the development of various technological applications. For example, nuclear energy is based on the fission or fusion of atomic nuclei to generate electricity. In addition, advances in semiconductor technology have enabled the creation of ever smaller and more powerful electronic devices, such as computers and smartphones.
Scientific research continues to explore the secrets of the atom. Particle accelerators and particle physics experiments seek to unravel the fundamental nature of matter and the universe. Understanding the atom is fundamental to our understanding of the world around us and to the development of new technologies that will improve our quality of life.

STEM OnLine mini dictionary
Atom
Basic unit of ordinary matter composed of a dense nucleus surrounded by a cloud of electrons.
Atomic Mass Unit
One-twelfth of the mass of a carbon-12 (¹²C) atom, used to express masses of atoms and molecules.
Atomic Nucleus
Central region of the atom, positively charged, containing almost all the mass of the system as protons and neutrons.
Atomic Number
Total number of protons in each atom of a given chemical element, represented by the letter Z.
Electron
Subatomic particle with a negative electrical charge of -1.602 × 10⁻¹⁹ C orbiting the atomic nucleus.
Electron Cloud
Outer region of the atom surrounding the nucleus where electrons are distributed in different energy levels.
Mass Number
Sum of the number of protons and neutrons present in the nucleus of an atom, represented by the letter A.
Neutron
Subatomic particle with no net electrical charge and a mass slightly greater than that of a proton, located in the nucleus.
Proton
Subatomic particle with a positive electrical charge of 1.602 × 10⁻¹⁹ C located in the atom’s nucleus.
Explore the exciting STEM world with our free, online, simulations and accompanying companion courses! With them you’ll be able to experience and learn hands-on. Take this opportunity to immerse yourself in virtual experiences while advancing your education – awaken your scientific curiosity and discover all that the STEM world has to offer!
Atom simulations
Rutherford scattering
The Rutherford scattering experiment revolutionized our understanding of the atom by demonstrating that the positive charge and almost all the mass of the atom are concentrated in a tiny nucleus, surrounded by electrons. This interactive simulation lets you recreate the experiment by launching alpha particles and observing how they deflect when they collide with the nucleus. Explore how the scattering of particles reveals the inner structure of the atom and visually grasp the fundamentals of the nuclear model proposed by Rutherford.
Atomic interactions
Explore the interactions between various combinations of two atoms. Observe the total force acting on the atoms or the attractive or repulsive force separately. Customize the attraction to see how the interaction is affected by changing the atomic diameter and interaction strength.
Giants of science
“If I have seen further, it is by standing on the shoulders of giants”
Isaac Newton
Edme Mariotte
–
Gilbert Newton Lewis
–
Become a giant
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Giants of science
“If I have seen further, it is by standing on the shoulders of giants”
Isaac Newton
Joseph Louis Gay-Lussac
–
Amedeo Avogadro
–
Become a giant
The Physics of Electronic Polymers (PEP)
Energy to Electrochemistry Final Exam
Electrochemistry
Pre-University Chemistry
Preparing for CLEP Chemistry: Part 1
Big Bang and the Origin of Chemical Elements
Professional development for Educators
Teach teens computing: Cybersecurity
Teach computing: Support SEND learners with computing
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Support kids’ projects: Programming with Scratch
Test your knowledge
What is an atom, and how is its internal structure organized according to the modern model?
How have atomic models evolved, and what key discoveries led to the quantum model?
What is an atom and what are its main parts?
Why are there so many atomic models, and what makes the current one different?
What is electron configuration, and why is it important?
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